https://www.rostrum.blog/tags/orderly/ Recent content in Orderly on rostrum.blog Hugo -- gohugo.io en-gb Fri, 31 Jan 2020 00:00:00 +0000 https://www.rostrum.blog/2020/01/31/reprobioinformatics/ Fri, 31 Jan 2020 00:00:00 +0000 https://www.rostrum.blog/2020/01/31/reprobioinformatics/ REPRODUCIBILITY 4 LYFE (via Bioinformatics London’s Meetup page) tl;dr I spoke at the latest Bioinformatics London Meetup (event link, Twitter) about workflow reproducibility tools in R. I explained the benefits of Will Landau’s {drake} package for doing this. Order, order Rich FitzJohn opened proceedings with an excellent introduction to his {orderly} package (source) that is intended for ‘lightweight reproducible reporting’. In short, the user declares inputs (anything, including things like SQL queries and CSV files) and artefacts (results) of their analysis.